SAMRAI::pdat::NodeData

SAMRAI::pdat::NodeData< DIM, TYPE > Class Template Reference

Class NodeData<DIM> manages data defined on nodes of cells in patches. It is a templated node-centered patch data structure derived from hier::PatchData<DIM>. Given a box, a node data object represents node-centered data of some template TYPE with a specified depth (that is, number of components for each spatial location). See the node geometry class for more information about the translation between the AMR index space and node-centered data. More...

#include <source/patchdata/node/NodeData.h>

Inheritance diagram for SAMRAI::pdat::NodeData< DIM, TYPE >:

[legend]List of all members.


Public Types
typedef NodeIterator< DIM >	Iterator
Public Member Functions
	NodeData (const hier::Box< DIM > &box, const int depth, const hier::IntVector< DIM > &ghosts, tbox::Pointer< tbox::Arena > pool=tbox::Pointer< tbox::Arena >((0)))
virtual	~NodeData ()
virtual void	copy (const hier::PatchData< DIM > &src)
virtual void	copy2 (hier::PatchData< DIM > &dst) const
virtual void	copy (const hier::PatchData< DIM > &src, const hier::BoxOverlap< DIM > &overlap)
virtual void	copy2 (hier::PatchData< DIM > &dst, const hier::BoxOverlap< DIM > &overlap) const
void	copyDepth (int dst_depth, const NodeData< DIM, TYPE > &src, int src_depth)
	Fast copy between the source and destination at the specified depths.
virtual bool	canEstimateStreamSizeFromBox () const
virtual int	getDataStreamSize (const hier::BoxOverlap< DIM > &overlap) const
virtual void	packStream (tbox::AbstractStream &stream, const hier::BoxOverlap< DIM > &overlap) const
virtual void	unpackStream (tbox::AbstractStream &stream, const hier::BoxOverlap< DIM > &overlap)
int	getDepth () const
ArrayData< DIM, TYPE > &	getArrayData ()
const ArrayData< DIM, TYPE > &	getArrayData () const
TYPE *	getPointer (const int d=0)
const TYPE *	getPointer (const int d=0) const
TYPE &	operator() (const NodeIndex< DIM > &i, const int d=0)
const TYPE &	operator() (const NodeIndex< DIM > &i, const int d=0) const
void	fill (const TYPE &t, const int d=0)
void	fill (const TYPE &t, const hier::Box< DIM > &box, const int d=0)
void	fillAll (const TYPE &t)
void	fillAll (const TYPE &t, const hier::Box< DIM > &box)
void	copyOnBox (const NodeData< DIM, TYPE > &src, const hier::Box< DIM > &box)
void	print (const hier::Box< DIM > &box, ostream &os=tbox::plog, int prec=-1) const
void	print (const hier::Box< DIM > &box, const int d, ostream &os=tbox::plog, int prec=-1) const
virtual void	getSpecializedFromDatabase (tbox::Pointer< tbox::Database > database)
virtual void	putSpecializedToDatabase (tbox::Pointer< tbox::Database > database)
Static Public Member Functions
static size_t	getSizeOfData (const hier::Box< DIM > &box, const int depth, const hier::IntVector< DIM > &ghosts)

Detailed Description

template<int DIM, class TYPE>
class SAMRAI::pdat::NodeData< DIM, TYPE >

A node data array is stored in (i,...,k,d) order, where i,...,k indicates spatial indices and the d indicates the component depth at that locaion. Memory allocation is in colum-major ordering (e.g., Fortran style) so that the leftmost index runs fastest in memory. For example, a three-dimensional node data object instantiated with a box [l0:u0,l1:u1,l2:u2] allocates a data array dimensioned as

     [ l0 : u0+1 ,
       l1 : u1+1,
       l2 : u2+1 , d ]

 *

One- and two-dimensional node data arrays are managed similarly.

The data type TYPE must define a default constructor (that takes no arguments) and also the assignment operator.

See also:

pdat::ArrayData

hier::PatchData

pdat::NodeDataFactory

pdat::NodeIndex

pdat::NodeIterator

pdat::NodeGeometry

Member Typedef Documentation

template<int DIM, class TYPE>

typedef NodeIterator<DIM> SAMRAI::pdat::NodeData< DIM, TYPE >::Iterator

The node iterator iterates over the elements of a node centered box geometry. This typedef is a convenient link to the NodeIterator<DIM> class.

Constructor & Destructor Documentation

template<int DIM, class TYPE>

SAMRAI::pdat::NodeData< DIM, TYPE >::NodeData ( const hier::Box< DIM > & box,

const int depth,

const hier::IntVector< DIM > & ghosts,

tbox::Pointer< tbox::Arena > pool = tbox::Pointer< tbox::Arena >((0))

)

The constructor for a node data object. The box describes the interior of the index space and the ghosts vector describes the ghost cells in each coordinate direction. The depth gives the number of components for each spatial location in the array. If the memory arena is not given, then the standard arena is used.

template<int DIM, class TYPE>

SAMRAI::pdat::NodeData< DIM, TYPE >::~NodeData ( ) [virtual]

The virtual destructor for a node data object.

Member Function Documentation

template<int DIM, class TYPE>

void SAMRAI::pdat::NodeData< DIM, TYPE >::copy ( const hier::PatchData< DIM > & src ) [virtual]

A fast copy between the source and destination. Data is copied from the source into the destination where there is overlap in the underlying index space. The copy is performed on the interior plus the ghost cell width (for both the source and destination). If copy() does not understand the source object type, then copy2() is called.

template<int DIM, class TYPE>

void SAMRAI::pdat::NodeData< DIM, TYPE >::copy2 ( hier::PatchData< DIM > & dst ) const [virtual]

A fast copy between the source and destination. Member function copy2() is similar to copy() except that the location of source and destination are reversed and copy2() throws an exception (aka dumps core) if it does not understand the type of the argument.

template<int DIM, class TYPE>

void SAMRAI::pdat::NodeData< DIM, TYPE >::copy ( const hier::PatchData< DIM > & src,

const hier::BoxOverlap< DIM > & overlap

) [virtual]

Copy data from the source into the destination using the designated overlap descriptor. The overlap description will have been computed using the appropriate box geometry objects. If copy() does not understand the source object type, then copy2() is called.

template<int DIM, class TYPE>

void SAMRAI::pdat::NodeData< DIM, TYPE >::copy2 ( hier::PatchData< DIM > & dst,

const hier::BoxOverlap< DIM > & overlap

) const [virtual]

Copy data from the source into the destination using the designated overlap descriptor. Member function copy2() is similar to the copy() member function except that the location of source and destination are reversed and copy2() throws an exception (aka dumps core) if it does not understand the type of the argument.

template<int DIM, class TYPE>

void SAMRAI::pdat::NodeData< DIM, TYPE >::copyDepth ( int dst_depth,

const NodeData< DIM, TYPE > & src,

int src_depth

)

Fast copy between the source and destination at the specified depths.
Data is copied from the source into the destination where there is overlap in the underlying index space. The copy is performed on the interior plus the ghost cell width (for both the source and destination).

template<int DIM, class TYPE>

bool SAMRAI::pdat::NodeData< DIM, TYPE >::canEstimateStreamSizeFromBox ( ) const [virtual]

Determines whether the patch data subclass can estinate the necessary stream size using only index space information. This routine is defined for the standard built-in types (bool, char, double, float, and int).
Implements SAMRAI::hier::PatchData< DIM >.

template<int DIM, class TYPE>

int SAMRAI::pdat::NodeData< DIM, TYPE >::getDataStreamSize ( const hier::BoxOverlap< DIM > & overlap ) const [virtual]

Calculate the number of bytes needed to stream the data lying in the specified box domain. This routine is defined for the standard built-in types (bool, char, double, float, and int).

template<int DIM, class TYPE>

void SAMRAI::pdat::NodeData< DIM, TYPE >::packStream ( tbox::AbstractStream & stream,

const hier::BoxOverlap< DIM > & overlap

) const [virtual]

Pack data lying on the specified index set into the output stream.

template<int DIM, class TYPE>

void SAMRAI::pdat::NodeData< DIM, TYPE >::unpackStream ( tbox::AbstractStream & stream,

const hier::BoxOverlap< DIM > & overlap

) [virtual]

Unpack data from the message stream into the specified index set.

template<int DIM, class TYPE>

int SAMRAI::pdat::NodeData< DIM, TYPE >::getDepth ( ) const [inline]

Return the depth (e.g., the number of components in each spatial location) of the array.

template<int DIM, class TYPE>

ArrayData< DIM, TYPE > & SAMRAI::pdat::NodeData< DIM, TYPE >::getArrayData ( ) [inline]

Return reference to the array data object.

template<int DIM, class TYPE>

const ArrayData< DIM, TYPE > & SAMRAI::pdat::NodeData< DIM, TYPE >::getArrayData ( ) const [inline]

Return a const reference to the array data object.

template<int DIM, class TYPE>

TYPE * SAMRAI::pdat::NodeData< DIM, TYPE >::getPointer ( const int d = 0 ) [inline]

Get a pointer to the beginning of a particular component of the node centered array.

template<int DIM, class TYPE>

const TYPE * SAMRAI::pdat::NodeData< DIM, TYPE >::getPointer ( const int d = 0 ) const [inline]

Get a const pointer to the beginning of a particular component of the node centered array.

template<int DIM, class TYPE>

TYPE & SAMRAI::pdat::NodeData< DIM, TYPE >::operator() ( const NodeIndex< DIM > & i,

const int d = 0

) [inline]

hier::Index into the node data array using a node index.

template<int DIM, class TYPE>

const TYPE & SAMRAI::pdat::NodeData< DIM, TYPE >::operator() ( const NodeIndex< DIM > & i,

const int d = 0

) const [inline]

hier::Index into the node data array (via a const reference) using a node index.

template<int DIM, class TYPE>

void SAMRAI::pdat::NodeData< DIM, TYPE >::fill ( const TYPE & t,

const int d = 0

) [inline]

Fill all values of component d with the value t.

template<int DIM, class TYPE>

void SAMRAI::pdat::NodeData< DIM, TYPE >::fill ( const TYPE & t,

const hier::Box< DIM > & box,

const int d = 0

) [inline]

Fill all values of component d within the box with the value t.

template<int DIM, class TYPE>

void SAMRAI::pdat::NodeData< DIM, TYPE >::fillAll ( const TYPE & t ) [inline]

Fill all components with value t.

template<int DIM, class TYPE>

void SAMRAI::pdat::NodeData< DIM, TYPE >::fillAll ( const TYPE & t,

const hier::Box< DIM > & box

) [inline]

Fill all components within the box with value t.

template<int DIM, class TYPE>

void SAMRAI::pdat::NodeData< DIM, TYPE >::copyOnBox ( const NodeData< DIM, TYPE > & src,

const hier::Box< DIM > & box

) [inline]

Copy data from supplied source over the supplied box.

template<int DIM, class TYPE>

size_t SAMRAI::pdat::NodeData< DIM, TYPE >::getSizeOfData ( const hier::Box< DIM > & box,

const int depth,

const hier::IntVector< DIM > & ghosts

) [static]

Calculate the amount of memory needed to represent the data in a node centered grid. This function assumes that the amount of memory needed for TYPE is sizeof(TYPE). If this is not the case, then a specialized function must be defined.

template<int DIM, class TYPE>

void SAMRAI::pdat::NodeData< DIM, TYPE >::print ( const hier::Box< DIM > & box,

ostream & os = tbox::plog,

int prec = -1

) const

Print all node centered data residing in the specified box. If the depth of the array is greater than one, all components are printed. Precision of floating point numbers (i.e., TYPE = float, double, or dcomplex) can be specified using the provided argument. The default is 12 decimal places for double and complex floating point numbers, and the default is 6 decimal places floats. For other types, this is ignored.

template<int DIM, class TYPE>

void SAMRAI::pdat::NodeData< DIM, TYPE >::print ( const hier::Box< DIM > & box,

const int d,

ostream & os = tbox::plog,

int prec = -1

) const

Print the specified component of the node centered data residing in the specified box. Precision of floating point numbers (i.e., TYPE = float, double, or dcomplex) can be specified using the provided argument. The default is 12 decimal places for double and complex floating point numbers, and the default is 6 decimal places floats. For other types, this is ignored.

template<int DIM, class TYPE>

void SAMRAI::pdat::NodeData< DIM, TYPE >::getSpecializedFromDatabase ( tbox::Pointer< tbox::Database > database ) [virtual]

Check that class version and restart file version are equal. If so, read data members from the database.
Assertions: database must be non-null pointer.
Implements SAMRAI::hier::PatchData< DIM >.

template<int DIM, class TYPE>

void SAMRAI::pdat::NodeData< DIM, TYPE >::putSpecializedToDatabase ( tbox::Pointer< tbox::Database > database ) [virtual]

Write out the class version number and other data members to the database.
Assertions: database must be non-null pointer.
Implements SAMRAI::hier::PatchData< DIM >.

The documentation for this class was generated from the following files:

source/patchdata/node/NodeData.h
source/patchdata/node/NodeData.C
source/patchdata/node/NodeData.I

Generated on Fri Dec 2 11:29:36 2005 for SAMRAI by

1.4.2

SAMRAI::pdat::NodeData< DIM, TYPE > Class Template Reference

Public Types

Public Member Functions

Static Public Member Functions

Detailed Description

template<int DIM, class TYPE> class SAMRAI::pdat::NodeData< DIM, TYPE >

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

template<int DIM, class TYPE>
class SAMRAI::pdat::NodeData< DIM, TYPE >